Epitope Mapping of HIV-Specific CD8+ T cells in a Cohort Dominated by Clade A1 Infection 英文参考文献.docVIP
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EpitopeMappingofHIV-SpecificCD8TcellsinaCohortDominatedbyCladeA1Infection英文参考文献
EpitopeMappingofHIV-SpecificCD8+TcellsinaCohort
DominatedbyCladeA1Infection
LyleR.McKinnon1,2*,XiaojuanMao1,JoshuaKimani1,2,CharlesWachihi2,ChristinaSemeniuk3 ,Mark
Mendoza3,BinhuaLiang1,MaLuo1,3,KeithR.Fowke1,2,FrancisA.Plummer1,2,3,T.BlakeBall1,2,4,5
1DepartmentofMedicalMicrobiology,UniversityofManitoba,Winnipeg,Canada,2DepartmentofMedicalMicrobiology,UniversityofNairobi,Nairobi,Kenya,3National
MicrobiologyLab,PublicHealthAgencyofCanada,Winnipeg,Canada,4NationalHIVandRetrovirologyLaboratory,PublicHealthAgencyofCanada,Ottawa,Canada,
5DepartmentofImmunology,UniversityofManitoba,Winnipeg,Canada
Abstract
Background: CD8+ T cell responses are often detected at large magnitudes in HIV-infected subjects, and eliciting these
responsesisthecentralaimofmanyHIV-1vaccinestrategies.PopulationdifferencesinCD8+Tcellepitopespecificitywill
needtobeunderstoodifvaccinesaretobeeffectiveinmultiplegeographicregions.
Methodology/Principal Findings:InalargeKenyancohort,wecomparedresponsiveCD8+TcellHIV-1Envoverlapping
peptides(OLPs)toBestDefinedEpitopes(BDEs),manyofwhichhavebeendefinedincladeBinfection.Whilethemajority
ofBDEs(69%)wererecognizedinthispopulation,nearlyhalfofresponsiveOLPs(47%)didnotcontaindescribedepitopes.
Recognition frequencies of BDEs were inversely correlated to epitopic sequence differences between clade A1 and BDE
(P=0.019),andpositivelyselectedresiduesweremorefrequentin‘‘new’’OLPs(withoutBDEs).Weassessedtheimpactof
HLA and TAP binding on epitope recognition frequencies, focusing on predicted and actual epitopes in the HLA B7
supertype.
Conclusions/Significance:AlthoughmanypreviouslydescribedCD8epitopeswererecognized,severalnovelCD8epitopes
weredefinedinthispopulation,implyingthatepitopemappingeffortshavenotbeencompletelyexhausted.Expansionof
thesestudieswillbecriticaltounderstandpopulationdifferencesinCD8epitoperecognition.
Citation:McKinnonLR,MaoX,KimaniJ,WachihiC,SemeniukC,etal.(2009)EpitopeMappingofHIV-SpecificCD8+TcellsinaCohortDominatedbyCladeA1
Infection.PLo
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