Secrets of Soil Survival Revealed by the Genome Sequence of Arthrobacter aurescens TC1 英文参考文献.docVIP

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Secrets of Soil Survival Revealed by the Genome Sequence of Arthrobacter aurescens TC1 英文参考文献.doc

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Secrets of Soil Survival Revealed by the Genome Sequence of Arthrobacter aurescens TC1 英文参考文献

SecretsofSoilSurvivalRevealed bytheGenomeSequence ofArthrobacteraurescensTC1 Emmanuel F.Mongodin1[,Nir Shapir2,3[,Sean C.Daugherty1,Robert T.DeBoy1,Joanne B.Emerson1, Alla Shvartzbeyn1,Diana Radune1,Jessica Vamathevan1,Florenta Riggs1,Viktoria Grinberg1,Hoda Khouri1, Lawrence P.Wackett2,3,Karen E.Nelson1¤,Michael J.Sadowsky2,3* 1TheInstitute for Genomic Research, Rockville,Maryland,UnitedStates ofAmerica,2TheBioTechnologyInstitute, University ofMinnesota,St.Paul,Minnesota,United StatesofAmerica,3MicrobialandPlantGenomicsInstitute,UniversityofMinnesota,St.Paul,Minnesota,UnitedStatesofAmerica Arthrobactersp.strainsareamongthemostfrequentlyisolated,indigenous,aerobicbacterialgenerafoundinsoils. Member of the genus are metabolically and ecologically diverse and have the ability to survive in environmentally harshconditionsforextendedperiodsoftime.ThegenomeofArthrobacteraurescensstrainTC1,whichwasoriginally isolatedfromsoilatanatrazinespillsite,iscomposedofasingle4,597,686basepair(bp)circularchromosomeandtwo circular plasmids, pTC1 and pTC2, which are 408,237 bp and 300,725 bp, respectively. Over 66% of the 4,702 open readingframes(ORFs)presentintheTC1genomecouldbeassignedaputativefunction,and13.2%(623genes)appear to be unique to this bacterium, suggesting niche specialization. The genome of TC1 is most similar to that of Tropheryma,Leifsonia,Streptomyces,andCorynebacteriumglutamicum,andanalysessuggestthatA.aurescensTC1has expanded its metabolic abilities by relying on the duplication of catabolic genes and by funneling metabolic intermediates generated by plasmid-borne genes to chromosomally encoded pathways. The data presented here suggestthatArthrobacter’senvironmentalprevalencemaybeduetoitsabilitytosurviveunderstressfulconditions inducedbystarvation,ionizingradiation,oxygenradicals,andtoxicchemicals. Citation:MongodinEF,ShapirN,DaughertySC,DeBoyRT,EmersonJB,etal.(2006)SecretsofsoilsurvivalrevealedbythegenomesequenceofArthrobacteraurescensTC1. PLoSGenet2(12)