Specificity and Evolvability in Eukaryotic Protein Interaction Networks 英文参考文献.docVIP

Specificity and Evolvability in Eukaryotic Protein Interaction Networks 英文参考文献.doc

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Specificity and Evolvability in Eukaryotic Protein Interaction Networks 英文参考文献

SpecificityandEvolvabilityinEukaryoticProtein InteractionNetworks Pedro Beltrao*,Luis Serrano EuropeanMolecularBiologyLaboratory,StructuresandComputationalBiologyProgram,Heidelberg,Germany Progress in uncovering the protein interaction networks of several species has led to questions of what underlying principles might govern their organization. Few studies have tried to determine the impact of protein interaction network evolution on the observed physiological differences between species. Using comparative genomics and structural information, we show here that eukaryotic species have rewired their interactomes at a fast rate of approximately 10à5 interactions changed per protein pair, per million years of divergence. For Homo sapiens this correspondsto103interactionschangedpermillionyears.Additionallywefindthatthespecificityofbindingstrongly determinestheinteractionturnoverandthatdifferentbiologicalprocessesshowsignificantlydifferentlinkdynamics. Inparticular,humanproteinsinvolvedinimmuneresponse,transport,andestablishmentoflocalizationshowsignsof positiveselectionforchangeofinteractions.Ouranalysissuggeststhatasmalldegreeofmoleculardivergencecan giverisetoimportantchangesatthenetworklevel.Weproposethatthepowerlawdistributionobservedinprotein interaction networks could be partly explained by the cell’s requirement for different degrees of protein binding specificity. Citation:BeltraoP,SerranoL(2007)Specificityandevolvabilityineukaryoticproteininteractionnetworks.PLoSComputBiol3(2):e25.doi:10.1371/journal.pcbi.0030025 pressures do not constrain the exact cellular interactions, butinsteadconstraintherequiredfunctionalcomplexesthat Introduction Manypartialprotein interactionmapsfor severaleukary- otic species have now been published [1–9], and several studies have tried to analyse the structure and evolution of such networks on a topological level [10–16]. The massive data produced by sequencing efforts has allowed for comparison of different genomes, giving us

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