Species Accumulation Curves and Incidence-Based Species Richness Estimators to Appraise the Diversity of Cultivable Yeasts from Beech Forest Soils 英文参考文献.docVIP

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Species Accumulation Curves and Incidence-Based Species Richness Estimators to Appraise the Diversity of Cultivable Yeasts from Beech Forest Soils 英文参考文献.doc

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Species Accumulation Curves and Incidence-Based Species Richness Estimators to Appraise the Diversity of Cultivable Yeasts from Beech Forest Soils 英文参考文献

SpeciesAccumulationCurvesandIncidence-Based SpeciesRichnessEstimatorstoAppraisetheDiversityof CultivableYeastsfromBeechForestSoils AndreyM.Yurkov1*,MartinKemler1,2,DominikBegerow1 1Geobotany, Department of Evolution and Biodiversity of Plants, Faculty of Biology and Biotechnology, Ruhr-Universita¨t Bochum, Bochum, Germany, 2Centre of ExcellenceinTreeHealthBiotechnology,ForestryandAgriculturalBiotechnologyInstitute(FABI),UniversityofPretoria,Pretoria,SouthAfrica Abstract Background: Yeast-like fungi inhabit soils throughout all climatic zones in a great abundance. While recent estimations predictedaplethoraofprokaryotictaxainonegramofsoil,similardataarelackingforfungi,especiallyyeasts. Methodology/Principal Findings: We assessed the diversity of soil yeasts in different forests of central Germany using cultivation-based techniqueswithsubsequentidentification based onrDNAsequencedata.Basedonexperiments using various pre-cultivation sample treatment and different cultivation media we obtained the highest number of yeasts by analysing mixed soil samples with a single nutrient-rich medium. Additionally, several species richness estimators were appliedtoincidence-baseddataof165samples.Allofthempredictedasimilarrangeofyeastdiversity,namely14to16 species.Randomizedspeciesrichnesscurvesreachedsaturationinallappliedestimators,thusindicatingthatthemajorityof speciesisdetectedafterapproximately30to50samplesanalysed. Conclusions/Significance: In this study we demonstrate that robust species identification as well as mathematical approachesareessentialtoreliablyestimatethesamplingeffortneededtodescribesoilyeastcommunities.Thisapproach hasgreatpotentialforoptimisationofcultivationtechniquesandallowshighthroughputanalysisinthefuture. Citation:YurkovAM,KemlerM,BegerowD(2011)SpeciesAccumulationCurvesandIncidence-BasedSpeciesRichnessEstimatorstoAppraisetheDiversityof CultivableYeastsfromBeechForestSoils.PLoSONE6(8):e23671.doi:10.1371/journal.pone.0023671 Editor:Ju¨rgBa¨hler, Univ