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a note on mate allocation for dominance handling in genomic selection报告在基因组选择伴侣分配主导处理
Toro and Varona Genetics Selection Evolution 2010, 42:33 Ge n e t i c s
/content/42/1/33
Se l e c t i o n
Evolution
RESEARCH Open Access
A note on mate allocation for dominance
handling in genomic selection
Miguel A Toro1*, Luis Varona2
Abstract
Estimation of non-additive genetic effects in animal breeding is important because it increases the accuracy of
breeding value prediction and the value of mate allocation procedures. With the advent of genomic selection
these ideas should be revisited. The objective of this study was to quantify the efficiency of including dominance
effects and practising mating allocation under a whole-genome evaluation scenario. Four strategies of selection,
carried out during five generations, were compared by simulation techniques. In the first scenario (MS), individuals
were selected based on their own phenotypic information. In the second (GSA), they were selected based on the
prediction generated by the Bayes A method of whole-genome evaluation under an additive model. In the third
(GSD), the model was expanded to include dominance effects. These three scenarios used random mating to con-
struct future generations, whereas in the fourth one (GSD + MA), matings were optimized by simulated annealing.
The advantage of GSD over GSA ranges from 9 to 14% of the expected response and, in addition, using mate allo-
cation (GSD + MA) provides an additional response ranging from 6% to 22%. However, mate selection can
improve the expected genetic response over random matin
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