ab initio and template-based prediction of multi-class distance maps by two-dimensional recursive neural networks从头开始的多层次距离映射和基于模板的预测二维递归神经网络.pdfVIP
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ab initio and template-based prediction of multi-class distance maps by two-dimensional recursive neural networks从头开始的多层次距离映射和基于模板的预测二维递归神经网络
BMC Structural Biology BioMed Central
Research article Open Access
Ab initio and template-based prediction of multi-class distance
maps by two-dimensional recursive neural networks
Ian Walsh1,2, Davide Baù1,2, Alberto JM Martin1,2, Catherine Mooney1,2,
Alessandro Vullo 1,2 and Gianluca Pollastri*1,2
Address: 1School of Computer Science and Informatics, University College Dublin, Dublin, Ireland and 2Complex and Adaptive Systems
Laboratory, University College Dublin, Dublin, Ireland
Email: Ian Walsh - ian.walsh@ucd.ie; Davide Baù - davide.bau@ucd.ie; Alberto JM Martin - albertoj@ucd.ie;
Catherine Mooney - catherine.mooney@ucd.ie; Alessandro Vullo - alessandro.vullo@ucd.ie; Gianluca Pollastri* - gianluca.pollastri@ucd.ie
* Corresponding author
Published: 30 January 2009 Received: 29 July 2008
Accepted: 30 January 2009
BMC Structural Biology 2009, 9:5 doi:10.1186/1472-6807-9-5
This article is available from: /1472-6807/9/5
© 2009 Walsh et al; licensee BioMed Central Ltd.
This is an Open Access article distributed under the terms of the Creative Commons Attribution License (/licenses/by/2.0),
which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
Abstract
Background: Prediction of protein structures from their sequences is still one of the open grand challenges of
computational biology. Some approaches to protein structure prediction, especially ab initio ones, rely to some
extent on the prediction of residue contact maps. Residue contact map predictions have been assessed at the
CASP compet
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