原创力文档using microsatellites to understand the physical distribution of recombination on soybean chromosomes利用微卫星理解复合大豆染色体上的物理分布.pdfVIP
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using microsatellites to understand the physical distribution of recombination on soybean chromosomes利用微卫星理解复合大豆染色体上的物理分布
Using Microsatellites to Understand the Physical
Distribution of Recombination on Soybean
Chromosomes
Alina Ott, Brian Trautschold, Devinder Sandhu*
Department of Biology, University of Wisconsin-Stevens Point, Stevens Point, Wisconsin, United States of America
Abstract
Soybean is a major crop that is an important source of oil and proteins. A number of genetic linkage maps have been
developed in soybean. Specifically, hundreds of simple sequence repeat (SSR) markers have been developed and mapped.
Recent sequencing of the soybean genome resulted in the generation of vast amounts of genetic information. The
objectives of this investigation were to use SSR markers in developing a connection between genetic and physical maps
and to determine the physical distribution of recombination on soybean chromosomes. A total of 2,188 SSRs were used for
sequence-based physical localization on soybean chromosomes. Linkage information was used from different maps to
create an integrated genetic map. Comparison of the integrated genetic linkage maps and sequence based physical maps
revealed that the distal 25% of each chromosome was the most marker-dense, containing an average of 47.4% of the SSR
markers and 50.2% of the genes. The proximal 25% of each chromosome contained only 7.4% of the markers and 6.7% of
the genes. At the whole genome level, the marker density and gene density showed a high correlation (R2) of 0.64 and 0.83,
respectively with the physical distance from the centromere. Recombination followed a similar pattern with comparisons
indicating that recombination is high in telomeric regions, though the correlation between crossover frequency and
distance from the centromeres is low (R2 = 0.21). Most o
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