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http :// journal . gxzw . gxib . c
http :// journal . gxzw . gxib . cn
http :// www . guihaia-j ournal . com
DOI: 10.11931/ guihaia . gxzw201508017
LI JJ ?LIU HX ?MAO SZ ?et al . Adaptive evolution of the ndhF
LI JJ ?LIU HX ?MAO SZ ?et al . Adaptive evolution of the ndhF gene in the genus Rheum (Polygonaceae )[J] . Guihaia ? 2016 ? 36(1) :101-106
Adaptive evolution of the ndhF gene in
the genus Rheum (Polygonaceae)
( 1 . College ofForestry and Landscape Architecture ? South China Agricultural University ? Guangzhou 510642
( 1 . College ofForestry and Landscape Architecture ? South China Agricultural University ? Guangzhou 510642 ? China? 2. Guangxi Institute
ofBotany ? Guangxi Zhuang Autonomous Region and the Chinese Academy ofSciences ? Guilin 541006 ? China? 3 . Institute
ofChinese Materia Medica ? China Academy ofChinese Medical Sciences ? Beijing 100193 ? China )
Abstract: Rheum ? a highly diversified genus of Polygonaceae ? comprising about 60 species ? is mainly distributed in the
mountainous and desert regions in Asia and Europe . Its high diversification in the Qinghai ̄Tibetan Plateau and adjacent
areas ?where approximately 40 species have been described ?was suggested to result from the adaptive radiation triggered
by the recent uplifts of the Qinghai ̄Tibetan Plateau and the quaternary climate oscillations . To further understand the
molecular adaptation linked to Rheum radiation ? the adaptive evolution of chloroplast ndhF gene belonging to 34 morpho ̄
logically diversified species of the genus Rheum were tested by using the Phylogenetic Analysis Program in this study .
The results showed that the pattern of phylogenic tree was a typical“ paralleling ”phylogeny ? suggesting a radiative di ̄
versification . Three amino acid sites (188H ?465H ?551L) of NDHF subunit were identified under positive selection (ω
1) ?and the secondary structures of NDHF subunit showed that the 188th amino acid was located in the α ̄helix . The
changes of these adaptive sites
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