Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.docVIP

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Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.doc

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Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome

BMC Genomics BioMedCentral Research article Open Access Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome Claudia C Englbrecht1, Heiko Schoof2 and Siegfried B?hm*3 Address: 1GSF-Forschungszentrum für Umwelt und Gesundheit, Institut für Bioinformatik, Ingolst?dter Landstrasse1, D-85764 Neuherberg, Germany, 2Technische Universit?t München, Chair of Genome Oriented Bioinformatics, Center of Life and Food Science, D-85354 Freising- Weihenstephan, Germany and 3Max-Delbrück-Centrum für Molekulare Medizin, Department of Genetics, Bioinformatics and Structural Biology, Robert-R?ssle-Strasse 10, D-13125 Berlin-Buch, Germany Email: Claudia C Englbrecht - c.englbrecht@gsf.de; Heiko Schoof - h.schoof@gsf.de; Siegfried B?hm* - boehm@mdc-berlin.de * Corresponding author Published: 05 July 2004 Received: 16 March 2004 Accepted: 05 July 2004 BMC Genomics 2004, 5:39 doi:10.1186/1471-2164-5-39 This article is available from: /1471-2164/5/39 ? 2004 Englbrecht et al; licensee BioMed Central Ltd. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose, provided this notice is preserved along with the articles original URL. Background: The classical C2H2 zinc finger domain is involved in a wide range of functions and can bind to DNA, RNA and proteins. The comparison of zinc finger proteins in several eukaryotes has shown that there is a lot of lineage specific diversification and expansion. Although the number of characterized plant proteins that carry the classical C2H2 zinc finger motifs is growing, a systematic classification and analysis of a plant genome zinc finger gene set is lacking. Results: We found through in silico analysis 176 zinc finger proteins in Arabidopsis thaliana that hence constitute the most abundant family of putative transcriptional regulators in this plant. Only a minority of 33 A. thalia