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RsfA(YbeB)ProteinsAreConservedRibosomalSilencing
Factors
RomanHa¨user1,2.,MarkusPech3,4.,JaroslawKijek3,4.,HiroshiYamamoto3,4.,Bjo¨rnTitz1¤,
FlorianNaeve1,AndreyTovchigrechko5,KaoriYamamoto3,4,WitoldSzaflarski3,6,NonoTakeuchi7,
ThorstenStellberger1,MarkusE.Diefenbacher1,KnudH.Nierhaus3,4*,PeterUetz1,8,9
*
1Institute of Toxicology and Genetics, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany, 2German Cancer Research Center (DKFZ), Heidelberg, Germany,
3Abteilung
AG Ribosomen Max-Planck-Institut fu¨r Molekulare Genetik, Berlin, 4Institut fu¨r Medizinische Physik und
Charite′–
Vingron,
Germany,
Biophysik,
Universita¨tsmedizin Berlin,Berlin,Germany,5J.CraigVenterInstitute(JCVI),Rockville,Maryland,UnitedStatesofAmerica,6DepartmentofHistologyandEmbryology,
PoznanUniversityofMedicalSciences,Poznan,Poland,7DepartmentofMedicalGenomeSciences,GraduateSchoolofFrontierSciences,UniversityofTokyo,Kashiwa-shi,
Chiba, Japan, 8Proteros Biostructures, Martinsried, Germany, 9Center for the Study of Biological Complexity, Virginia Commonwealth University, Richmond, Virginia,
UnitedStatesofAmerica
Abstract
TheYbeB(DUF143)familyofuncharacterizedproteinsisencodedbyalmostallbacterialandeukaryoticgenomesbutnot
archaea.Whiletheyhavebeenshowntobeassociatedwithribosomes,theirmolecularfunctionremainsunclear.Herewe
showthatYbeBisaribosomalsilencingfactor(RsfA)inthestationarygrowthphaseandduringthetransitionfromrichto
poormedia. A knock-outof the rsfA geneshows twostrong phenotypes: (i)the viability ofthemutant cells aresharply
impaired during stationary phase (as shown by viability competition assays), and (ii) during transition from rich to poor
mediathemutantcellsadaptslowlyandshowagrowthblockofmorethan10hours(asshownbygrowthcompetition
assays). RsfA silences translation by binding to the L14 protein of the large ribosomal subunit and, as a consequence,
impairssubunitjoining(asshownbymolecularmodeling,reporter geneanalysis, invitrotranslationassays,andsucrose
gradient
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