Sequence Fingerprints of MicroRNA Conservation 英文参考文献.docVIP

Sequence Fingerprints of MicroRNA Conservation 英文参考文献.doc

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Sequence Fingerprints of MicroRNA Conservation 英文参考文献

SequenceFingerprintsofMicroRNAConservation BingShi1,2*,WeiGao1,JuanWang2* 1DepartmentofCardiology,PekingUniversityThirdHospital,Beijing,China,2DepartmentofBiomedicalInformatics,PekingUniversityHealthScienceCenter,Beijing, China Abstract Itisknownthattheconservationofprotein-codinggenesisassociatedwiththeirsequencesbothvariousspecies,suchas animals and plants. However, the association between microRNA (miRNA) conservation and their sequences in various speciesremainsunexplored.HerewereporttheassociationofmiRNAconservationwithitssequencefeatures,suchasbase content and cleavage sites, suggesting that miRNA sequences contain the fingerprints for miRNA conservation. More interestingly, different species show different and even opposite patterns between miRNA conservation and sequence features.Forexample,mammalianmiRNAsshowapositive/negativecorrelationbetweenconservationandAU/GCcontent, whereas plant miRNAs show a negative/positive correlation between conservation and AU/GC content. Further analysis puts forward the hypothesis that the introns of protein-coding genes may be a main driving force for the origin and evolution of mammalian miRNAs. At the 59 end, conserved miRNAs have a preference for base U, while less-conserved miRNAshaveapreferenceforanon-Ubaseinmammals.Thisdifferencedoesnotexistininsectsandplants,inwhichboth conservedmiRNAsandless-conservedmiRNAshaveapreferenceforbaseUatthe59end.Wefurtherrevealedthatthenon- Upreferenceatthe59endofless-conservedmammalianmiRNAsisassociatedwithmiRNAfunctiondiversity,whichmay have evolved from the pressure of a highly sophisticated environmental stimulus the mammals encountered during evolution.TheseresultsindicatedthatmiRNAsequencescontainthefingerprintsforconservation,andthesefingerprints vary according to species. More importantly, the results suggest that although species share common mechanisms by whichmiRNAsoriginateandevolve,mammalsmaydevelopanovelmechanismformiRNAoriginandevolution.Inaddition, the fingerprint found i

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