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Sequence Fingerprints of MicroRNA Conservation 英文参考文献
SequenceFingerprintsofMicroRNAConservation
BingShi1,2*,WeiGao1,JuanWang2*
1DepartmentofCardiology,PekingUniversityThirdHospital,Beijing,China,2DepartmentofBiomedicalInformatics,PekingUniversityHealthScienceCenter,Beijing,
China
Abstract
Itisknownthattheconservationofprotein-codinggenesisassociatedwiththeirsequencesbothvariousspecies,suchas
animals and plants. However, the association between microRNA (miRNA) conservation and their sequences in various
speciesremainsunexplored.HerewereporttheassociationofmiRNAconservationwithitssequencefeatures,suchasbase
content and cleavage sites, suggesting that miRNA sequences contain the fingerprints for miRNA conservation. More
interestingly, different species show different and even opposite patterns between miRNA conservation and sequence
features.Forexample,mammalianmiRNAsshowapositive/negativecorrelationbetweenconservationandAU/GCcontent,
whereas plant miRNAs show a negative/positive correlation between conservation and AU/GC content. Further analysis
puts forward the hypothesis that the introns of protein-coding genes may be a main driving force for the origin and
evolution of mammalian miRNAs. At the 59 end, conserved miRNAs have a preference for base U, while less-conserved
miRNAshaveapreferenceforanon-Ubaseinmammals.Thisdifferencedoesnotexistininsectsandplants,inwhichboth
conservedmiRNAsandless-conservedmiRNAshaveapreferenceforbaseUatthe59end.Wefurtherrevealedthatthenon-
Upreferenceatthe59endofless-conservedmammalianmiRNAsisassociatedwithmiRNAfunctiondiversity,whichmay
have evolved from the pressure of a highly sophisticated environmental stimulus the mammals encountered during
evolution.TheseresultsindicatedthatmiRNAsequencescontainthefingerprintsforconservation,andthesefingerprints
vary according to species. More importantly, the results suggest that although species share common mechanisms by
whichmiRNAsoriginateandevolve,mammalsmaydevelopanovelmechanismformiRNAoriginandevolution.Inaddition,
the fingerprint found i
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