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Protein Array Patterning by Diffusive Gel Stamping 英文参考文献
ProteinArrayPatterningbyDiffusiveGelStamping
MekhailAnwar1,2,3*¤a,PiyushB.Gupta1,4,RajaPalaniapan1,4,PaulMatsudaira1,2,4,5¤b
1WhiteheadInstituteforBiomedicalResearch,Cambridge,Massachusetts,UnitedStatesofAmerica,2Whitehead-MassachusettsInstitutesofTechonologyBioimaging
Center, Cambridge, Massachusetts, United States of America, 3Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology,
Cambridge, Massachusetts, United States of America, 4Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of
America,5DepartmentofBiologicalEngineering,MassachusettsInstituteofTechnology,Cambridge,Massachusetts,UnitedStatesofAmerica
Abstract
Proteinsandsmallmoleculesaretheeffectorsofphysiologicalactioninbiologicalsystemsandcomprehensivemethodsare
neededtoanalyzetheirmodifications,expressionlevelsandinteractions.Systems-scalecharacterizationoftheproteome
requires thousands of components in high-complexity samples to be isolated andsimultaneously probed. While protein
microarraysofferapromisingapproachtoprobesystems-scalechangesinahigh-throughputformat,theyarelimitedby
the need to individually synthesize tens of thousands of proteins. We present an alternative technique, which we call
diffusive gel (DiG) stamping, for patterning a microarray using a cellular lysate enabling rapid visualization of dynamic
changesintheproteomeaswellproteininteractions.Amajoradvantageofthemethoddescribed isthatitrequiresno
specialized equipment or in-vitro protein synthesis, making it widely accessible to researchers. The method can be
integrated with mass spectrometry, allowing for the discovery of novel protein interactions. Here, we describe and
characterizethesensitivityandphysicalfeaturesofDiG-Stamping.WedemonstratethebiologicutilityofDiG-Stampingby
(1)identifyingthebindingpartnersofatargetproteinwithinacellularlysateandby(2)visualizingthedynamicsofproteins
withmultiplepost-translationalmodifications.
Ci
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